Stardate: 48439.7. As the Maquis crewmembers begin to integrate themselves into the Starfleet crew, Voyager becomes trapped in a quantum singularity.

Stardate: Unknown. After being hit by the shockwave of a devastating planet-wide explosion, Voyager investigates. While on the surface, Janeway and Paris are accidentally 'shifted' one day into the past.

Stardate: 48532.4. During an away mission, Neelix is attacked and his lungs are surgically removed. His only hope for survival is if the crew of Voyager can get them back.

Stardate: 48546.2. Janeway tries to figure out what her dynamic with the crew should be while all stuck in the Delta Quadrant together. Voyager tries to harvest omicron particles to refuel the ship, but inadvertently injures a spacefaring organism.

Stardate: Unknown. Tom Paris is accused of a murder he claims he did not commit. His sentence is to re-live the last few moments of his victim's life every 14 hours through a memory transplant.

Stardate: 48623.5. A transporter accident swaps Harry Kim with a dying woman from another dimension. Harry finds himself among aliens who believe he’s returned from their afterlife, while the woman, expecting paradise, wakes up on the Voyager.

Stardate: 48642.5. The Voyager crew are offered luxurious shore leave by the advanced and gregarious Sikarians, who have a device that could send Voyager 40,000 light years closer to home. However, Sikarian law strictly prohibits sharing their technology with others.

Stardate: 48658.2. When stolen Federation technology is found on a severely damaged Kazon Nistrim ship, Seska becomes the prime suspect. The evidence is further reinforced when questions arise regarding her true heritage.

Stardate: 48693.2. Harry Kim disappears from the holodeck during his holo-novel, "Beowulf." According to the characters, he died at the hands of a mystical beast known as "Grendel". When Chakotay and Tuvok also disappear, the Doctor is transferred to the holodeck to investigate.

Stardate: 48734.2. After Chakotay and Tuvok are injured in a shuttle accident, a non-corporeal life form begins to wreak havoc on Voyager by infiltrating the minds of the crew and altering the ship's systems one by one.

Stardate: 48784.2. The Vidiians capture Paris, Torres and Durst while on an away mission. Torres is taken to a lab and 'split' into two people: one human, and one Klingon.

Stardate: 48832.1. The inventor of a weapon that slaughtered Neelix’s people contacts Neelix to warn of a fatal disease he may have contracted as a side effect.

Stardate: 48846.5. In order to bring some rebellious Maquis crewmembers into line, Tuvok gives them a Starfleet Academy crash course. Meanwhile, the crew investigate a series of failures affecting the Voyager’s bio-neural systems.