Stardate: 48439.7. As the Maquis crewmembers begin to integrate themselves into the Starfleet crew, Voyager becomes trapped in a quantum singularity.

Stardate: Unknown. After being hit by the shockwave of a devastating planet-wide explosion, Voyager investigates. While on the surface, Janeway and Paris are accidentally 'shifted' one day into the past.

Stardate: 48532.4. During an away mission, Neelix is attacked and his lungs are surgically removed. His only hope for survival is if the crew of Voyager can get them back.

Stardate: 48579.4. The discovery of a wormhole leading to the Alpha Quadrant elates the crew, however, their only contact within range is a skeptical and paranoid Romulan.

Stardate: Unknown. Tom Paris is accused of a murder he claims he did not commit. His sentence is to re-live the last few moments of his victim's life every 14 hours through a memory transplant.

Stardate: 48623.5. A transporter accident swaps Harry Kim with a dying woman from another dimension. Harry finds himself among aliens who believe he’s returned from their afterlife, while the woman, expecting paradise, wakes up on the Voyager.

Stardate: 48642.5. The Voyager crew are offered luxurious shore leave by the advanced and gregarious Sikarians, who have a device that could send Voyager 40,000 light years closer to home. However, Sikarian law strictly prohibits sharing their technology with others.

Stardate: 48658.2. When stolen Federation technology is found on a severely damaged Kazon Nistrim ship, Seska becomes the prime suspect. The evidence is further reinforced when questions arise regarding her true heritage.

Stardate: 48693.2. Harry Kim disappears from the holodeck during his holo-novel, "Beowulf." According to the characters, he died at the hands of a mystical beast known as "Grendel". When Chakotay and Tuvok also disappear, the Doctor is transferred to the holodeck to investigate.

Stardate: 48734.2. After Chakotay and Tuvok are injured in a shuttle accident, a non-corporeal life form begins to wreak havoc on Voyager by infiltrating the minds of the crew and altering the ship's systems one by one.

Stardate: 48784.2. The Vidiians capture Paris, Torres and Durst while on an away mission. Torres is taken to a lab and 'split' into two people: one human, and one Klingon.

Stardate: 48832.1. The inventor of a weapon that slaughtered Neelix’s people contacts Neelix to warn of a fatal disease he may have contracted as a side effect.

Stardate: 48846.5. In order to bring some rebellious Maquis crewmembers into line, Tuvok gives them a Starfleet Academy crash course. Meanwhile, the crew investigate a series of failures affecting the Voyager’s bio-neural systems.