Stardate: 51008. Janeway begins the process of integrating Seven of Nine into the Voyager crew. Meanwhile, Kes begins to experience extreme advances in her mental powers.

Stardate: Unknown. When Voyager is forced to eject its warp core, Torres and Paris take a shuttle to retrieve it. But when the shuttle is damaged, the two officers are forced to abandon it—and find themselves alone in space with a rapidly depleting oxygen supply.

Stardate: 51082.4. Chakotay is stranded on a planet where two races are trying to wipe each other out in a massive, planet-wide war.

Stardate: 51186.2. Torres and the Doctor assist a holographic ship's servant whose crew has been killed. Meanwhile, when Kim and Seven of Nine are assigned to work on a project together, the ensign attempts to get to know the person inside the mysterious former-Borg.

Stardate: Unknown. Seven of Nine steals a shuttlecraft and flees Voyager in an attempt to answer a mysterious homing beacon and return to the Borg Collective.

Stardate: 51244.3. When members of the crew begin suffering from bizarre mutations, Seven of Nine may be the only one who can uncover the reasons why.

Stardate: 51268.4. The Voyager crew finds its determination and morale challenged when trying to survive a brutal, long-lasting conflict with a race called the Krenim.

Stardate: 51425.4. While Chakotay and Paris remain on board Annorax's time ship, Janeway attempts to repair Voyager enough to pursue her crew members' abductors.

Stardate: 51367.2. After making contact with a race of telepaths, the Voyager crew must help defuse a volatile situation when a local citizen acts on a random, violent thought inadvertently tranferred from Torres.

Stardate: 51386.4. Janeway and the hologram of Leonardo da Vinci must work together to retrieve Voyager's main computer processor, which has been stolen by alien thieves.

Stardate: 51449.2. Neelix is killed during an away mission, but Seven of Nine is able to revive him using Borg technology, leading him into a crisis of faith regarding the afterlife.

Stardate: 51471.3. The crew is 'attacked' by a species of alien that live in the human dream state. It is up to Chakotay, with extensive knowledge about the dream state, to save the ship and its crew.

Stardate: Unknown. When Seven discovers an alien communications array, the crew devises a way of sending the Doctor's program across it into the Alpha Quadrant, where he finds himself aboard a Starfleet vessel that has been commandeered by the Romulans.

Stardate: 51501.4. As letters from the Alpha Quadrant come trickling through the communications array, the Voyager crew learns of an assortment of joyous, disturbing, and inevitable news.

Stardate: 51652.3. The crew rescues a critically injured but aggressive Hirogen hunter, who threatens to have his allies destroy Voyager if Janeway comes between him the hunt for his latest prey: a single creature from Species 8472.

Stardate: 51658.2. While re-fitting Voyager's systems with newly traded weapons, Seven of Nine claims to have been assaulted by Kovin, the weapons dealer. The Doctor soon makes a surprising discovery about the situation.

Stardate: Unknown. After having taken over Voyager, the Hirogen supply the crew members with artificial identities and subject them to violent holodeck simulations.

Stardate: 51715.2. The crew must stop an artificial holodeck rendition of a World War II battle from spilling onto the decks of the ship while simultaneously dealing with a Hirogen takeover.

Stardate: 51762.4. An alien test pilot who has the capability of switching bodies manages to take Tom's place aboard Voyager in order to escape the law.

Stardate: 51781.2. When the Voyager computer detects a mysterious, powerful, and extremely dangerous substance, Janeway must risk all to attempt destroying it.

Stardate: Unknown. An alien woman who requests asylum on board Voyager claims that she was onboard the ship a month ago, and she fell in love with Chakotay.

Stardate: Unknown. Kim and Paris beam down to a hellish, barren planet to search for deuterium, a crucial energy source required to keep the ship running.

Stardate: 51929.3. The crew goes into stasis during a month-long journey through a nebula, leaving Seven and the Doctor in sole charge of running the ship.

Stardate: 51978.2. When an alien helps the Voyager crew decode the mysterious encrypted message from Starfleet, the crew learns the whereabouts of a secret experimental starship that may be able to get them back to the Alpha Quadrant within a mere matter of months.